rs13464250 SNP Detail

Summary

• ID
  rs13464250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148021087 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCCCG TTGGCCTGGC TTCTTCTGGT
  Y
  CAGGCGAAGG ATGACGCCAA GCTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45688669	mCV23034631	ABI	CRAMUS_MOUSE	r	SNP	A	A	G	G	A
ss147987404	ENSMUSSNP4640705	ENSEMBL	ENSEMBL_Sanger	r	SNP		A	G
ss321415847	CHEV_4_147310739	CHEVERUD	SCREENING_POP	r	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13464250					SNP	T	T	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148021087 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15284	CpG island 15284			within coordinates
Plod1	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr377387	regulatory region 377387			647 bp upstream
Rr604526	regulatory region 604526			85 bp proximal
Rr604527	regulatory region 604527			772 bp proximal
Rr604528	regulatory region 604528			1427 bp proximal
Tssr40234	transcription start site region 40234			183 bp upstream
Tssr44566	transcription start site region 44566			83 bp downstream
Tssr44567	transcription start site region 44567			131 bp downstream