rs13463716 SNP Detail

Summary

• ID
  rs13463716
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:30841841 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGACC TGTCTGAAGA AGGAGAAGAC
  K
  GCTAAGCTCA TCCCCAATGC CATTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60989105	NES16134671	PERLEGEN	MM_PANEL2	r	SNP	A		A	A	A	A	C	A	A	C	A		A	A	C		C
ss148700736	ENSMUSSNP166183	ENSEMBL	ENSEMBL_Sanger	r	SNP		A							A
ss322139669	CHEV_7_31927435	CHEVERUD	SCREENING_POP	r	SNP												A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13463716					SNP	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60989105	NES16134671	PERLEGEN	MM_PANEL	r	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30841841 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gramd1a	GRAM domain containing 1A			Coding-Synonymous
				Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr645031	regulatory region 645031			1811 bp distal
Tssr71945	transcription start site region 71945			211 bp downstream