rs13463331 SNP Detail

Summary

• ID
  rs13463331
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:60092662 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTTCT GATGCTGCCG GGGCTCCTGC
  K
  TGCAGTTTCT CTGTCAGCTC CAGCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37193305	NES08420741	PERLEGEN	MM_PANEL2	r	SNP	C		C	A	A	C		C	A	C	A	C
ss38825078	mCV23675932	ABI	CRAMUS_MOUSE	f	SNP		G	G				T
ss132249183	ENSMUSSNP2205597	ENSEMBL	ENSEMBL_Sanger	r	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs13463331					SNP	G	G	G	T	T	G	T	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37193305	NES08420741	PERLEGEN	MM_PANEL	r	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:60092662 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2979	CpG island 2979			1661 bp distal
Mir6921	microRNA 6921			1219 bp upstream
Mir6922	microRNA 6922			426 bp downstream
Rr448350	regulatory region 448350			1992 bp distal
Rr448351	regulatory region 448351			1755 bp distal
Srebf1	sterol regulatory element binding transcription factor 1			Coding-Synonymous
				Noncoding-Transcript-Variant