rs13459184 SNP Detail

Summary

• ID
  rs13459184
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95029722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGC TCCTACAGCC TCTGCACTGG
  Y
  TCCACATGCT GGGACCGGGA CTGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16374789	03.095.430	TWGNF	TWGNF-Mouse-2	f	SNP	C	C	T	T	T	C	T	T	C	C	T	C	C	C	C	T	T	C	T	T	T	T	T	C	T	T	C	T	C	C	C	T	T	T	T	T	T	C		T	T	T	T	T	T	T	T
ss45544462	mCV24559498	ABI	CRAMUS_MOUSE	f	SNP	C	C	T						C											T
ss46771718	NES10667283	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C		T							C					T		T			T					C		T			T				C
ss135510020	ENSMUSSNP5828041	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T																	T
ss320841116	CHEV_3_94926333	CHEVERUD	SCREENING_POP	f	SNP																										T																	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13459184					SNP	C	C	T	T	T	C	T	T	C	C	T	C	C	C	C	T	T	C	T	T	T	T	T	C	T	T	C	T	C	C	C	T	T	T	T	T	T	C	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771718	NES10667283	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95029722 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D3Umi9	DNA segment, Chr 3, University of Michigan 9			within coordinates
Rr580818	regulatory region 580818			401 bp distal
Rr580819	regulatory region 580819			1893 bp proximal
Tssr30490	transcription start site region 30490			109 bp upstream
Vps72	vacuolar protein sorting 72			Coding-NonSynonymous
				Noncoding-Transcript-Variant