rs13459069 SNP Detail

Summary

• ID
  rs13459069
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:65298790 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGATG ACCTTAGTAA GCACTTACTT
  R
  GTAGCCTTCG CGTACAAGAA TGTAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	SWR/J
ss16374653	03.065.742	TWGNF	TWGNF-Mouse-2	r	SNP	C	T	C	C	T	T	T	T	T	C	C	C	C	C	T	C	C	C	T	T	T	T	C	T	C	C	C	T	C	C	T	C	C	C	C	T	C	C	T	C	T
ss45456176	mCV24254343	ABI	CRAMUS_MOUSE	r	SNP	C	T					T											C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	SWR/J
rs13459069					SNP	G	A	G	G	A	A	A	A	A	G	G	G	G	G	A	G	G	G	A	A	A	A	G	A	G	G	G	A	G	G	A	G	G	G	G	A	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65298790 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13227	CpG island 13227	632 bp proximal
Cpgi13228	CpG island 13228	1931 bp proximal
Gm5540	predicted pseudogene 5540	1968 bp upstream
Rr397698	regulatory region 397698	1149 bp upstream
Rr577676	regulatory region 577676	1089 bp proximal
Rr577677	regulatory region 577677	1174 bp proximal
Ssr3	signal sequence receptor, gamma	Coding-Synonymous
Tssr893	transcription start site region 893	383 bp upstream
Tssr33464	transcription start site region 33464	1177 bp downstream
Tssr33465	transcription start site region 33465	1210 bp downstream