rs108934624 SNP Detail

Summary

• ID
  rs108934624
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113068550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTTCTTG ACTTAGTATA
  ATTTATTGGG GTAGAAATAC GCCTTTTTCT TCTAAAAATG TGTGTTGAAA TGCTAGGTCA
  TGTTTGTTCC TGGTGGACGC CACTGCTGCA GTAGCTCCTC AGCAGACATT CCTTTTTTTT
  TTTTTTTTTC TTCGAGACAG GGTTTCTCTG TGTATCTTAA CTCAGAAATT TGCCTGCCTC
  Y
  GCCTCCCAAG TGCTGGGATT AAAGGCCTGC ACCACCACAC CCGGCTAGCA GACATTTCAT
  GAATGTTTAT AAAAAGTACC ATTTCAGATG AATTCAGGTG TTTTAAAAAT GAGTTAAATG
  TTTTATTCTT GCTAACTGAG ATATCCTAAG AGTTACAGTT TCACATTTTA ACACTATCAA
  GTTGTAATAA GTAGACTAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss133563206	ENSMUSSNP463507	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C		T
ss321909800	CHEV_6_113041583	CHEVERUD	SCREENING_POP	f	SNP				C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs108934624					SNP	C	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113068550 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr636456	regulatory region 636456			2000 bp distal
Rr636457	regulatory region 636457			1434 bp proximal
Rr636458	regulatory region 636458			1472 bp proximal
Setd5	SET domain containing 5			Intron
				Noncoding-Transcript-Variant