rs108931435 SNP Detail

Summary

• ID
  rs108931435
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:22033025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT AGGAGCCATC TAGGAGATGC
  Y
  AAAAAGTAGC AGGTGATTTT CCTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146959985	ENSMUSSNP4089533	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss323270359	CHEV_10_21876932	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108931435					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22033025 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1373	CpG island 1373	1273 bp proximal
Raet1a	retinoic acid early transcript 1, alpha	1483 bp upstream
Raet1e	retinoic acid early transcript 1E	1416 bp upstream
Rr428833	regulatory region 428833	953 bp proximal
Rr428834	regulatory region 428834	1471 bp proximal
Tssr92677	transcription start site region 92677	1269 bp upstream
Tssr92678	transcription start site region 92678	1343 bp upstream
Tssr92679	transcription start site region 92679	1395 bp upstream
Tssr92680	transcription start site region 92680	1440 bp upstream