rs108921604 SNP Detail

Summary

• ID
  rs108921604
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78501490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAAATTCC TAGATACATT
  ATGCATATAT ATGTAACAAT TAATGAAAAA GTAGGCACAA AGTTGAAAAA GACCAAGCAA
  GGGTGTATAG GAGGGTTTGG AAGTAGAAAA GTGAAGAGCA AATTATGCAA TTATATTACA
  ATATGAAAAA ATTAAATAAA TAATATATAC GGTTATGTAG CTTAGTCATA GATACTTACC
  Y
  AGCATGCATG GGACTCACGG TTTCATCTTC AGTGCCAGTT TTCTAAAAAG TAGAATTCCT
  CCTGACAGTT ACAGAACTGT ATTTTTTTTT TAATTAAAGA AGAGAAAATA TAAGGAAAAG
  TTATCGCAGC CAAATGATGA CTCTTATCCT CCACATGCTG CTGCGGACTT CCTGCGTTAC
  GTGGAATTTA TATAACACGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135359184	ENSMUSSNP6252676	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs108921604					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78501490 () rs orientation: forward

Symbol	Name	Function Class
Gm65533	predicted gene, 65533	within coordinates
Rr578423	regulatory region 578423	334 bp proximal
Rr578424	regulatory region 578424	753 bp proximal
Tssr33603	transcription start site region 33603	156 bp downstream
Tssr33604	transcription start site region 33604	226 bp downstream
Tssr33605	transcription start site region 33605	239 bp downstream
Tssr33606	transcription start site region 33606	254 bp downstream
Tssr33607	transcription start site region 33607	330 bp downstream
Tssr33608	transcription start site region 33608	388 bp downstream