rs108918991 SNP Detail

Summary

• ID
  rs108918991
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:20020090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGGTTCT GGAGAAAAAC
  AAGAATGGCT TTCAGTTCAC CATTATTGTT AAAGCTGGGC TGACAGGTTC ACGGGGAATC
  CACCAATACT TAGATGAATG CAGAAGTTTG AAAATTTCTC AAATTACATG TACATTTTTT
  GGGTTCTGTA ATTACAACAC ACAGAGAGAT CTGATATTAT ATAGGAAATT TCAAATTATT
  Y
  GAGAGGGGTG GTTACTTTGC TTAATGTTTT TATACCATGA CCCAAAGGTG AGAACTTTCC
  CTTAAATTAT GAAACTCTCA ATCATCCTGA AATGGCTGTT GTGTATGACT CAGTCAATTA
  CCAATTTAAT AATTATCATT CTCTGAGACT TATAGGCCCC CTAGACATTA GCCTCTCATT
  TCTTTTTTTA TAAGTCCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss134671359	ENSMUSSNP4935626	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs108918991					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20020090 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cp	ceruloplasmin			Intron
				Noncoding-Transcript-Variant
Rr574045	regulatory region 574045			856 bp distal
Rr574046	regulatory region 574046			315 bp distal
Tssr28543	transcription start site region 28543			419 bp upstream
Tssr28544	transcription start site region 28544			437 bp upstream