rs108910419 SNP Detail

Summary

• ID
  rs108910419
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:22032702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CAGAAATGCC ACGTTATAGC AATATTTAAA GAGACTGGTA
  AATATAAGCT ATGTGCTGTG TAGTTTCATG TCAACTTGAT GTAAGGTAAA ATCATATGTG
  A
  GGAGAGACCC TTGGTTTTAA AATGCTTCCA TAAGATAAGA ATGGAAACAA GCCTATAGGG
  CATTTTCTCT ACTACTGTTC AATGTGGAGG GCCCAGCCCC T                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146959937	ENSMUSSNP1069958	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs108910419					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22032702 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1373	CpG island 1373	1596 bp proximal
Raet1a	retinoic acid early transcript 1, alpha	1806 bp upstream
Raet1e	retinoic acid early transcript 1E	1739 bp upstream
Rr428833	regulatory region 428833	1276 bp proximal
Rr428834	regulatory region 428834	1794 bp proximal
Tssr92677	transcription start site region 92677	1592 bp upstream
Tssr92678	transcription start site region 92678	1666 bp upstream
Tssr92679	transcription start site region 92679	1718 bp upstream
Tssr92680	transcription start site region 92680	1763 bp upstream