rs108908875 SNP Detail

Summary

• ID
  rs108908875
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153565513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTTGTCA CCCGACAGGT
  CTGACCTGGG CTGAGTGACA CCTCTGAGTC TTGGTGTTTC CAGCAGCAGC TCCCCCTTTC
  TTCCTGCAGT GTAACCCAGT GATGATCGAT GCCATCAAGG TGTCTGCTGC TCACAGGGCC
  CGGTACTTCT GGGGTAACCT ACCCGGAATG AACAGGTAAG AGTCCTGAGG GGGACAGGGA
  M
  CAGAGAGCAG AGTTATATCT AGGTCTTCAT TGACATTCTA GCCTTCTAGA AAGTCCTGAC
  TTTGGGCTGC TCTGGATAAT TGGAGCACTG GGCAGGACTC CTCAGGCAGC TGCAGTGCTC
  CAGCTTCAGG GCAGGCGTTT CTCCAGGTCC CTCCAAGGGC TGTGAGTACT GTCAAGCCCC
  TCTGTTCTTT CCCGCTGTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148002190	ENSMUSSNP4755843	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss320564610	CHEV_2_153549329	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108908875					SNP	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153565513 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3c	DNA methyltransferase 3C	Intron
Rr567732	regulatory region 567732	135 bp distal
Rr567733	regulatory region 567733	796 bp proximal