rs108900888 SNP Detail

Summary

• ID
  rs108900888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138611241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TGCCCATCCA GGTGTCCATC CAGGTGTCTG TGCAGGTGTC
  TGTGCAGGTG CTCATCCAGG TGTCCTTGCA GGTGTCTGTG CAGGTGCCCA TCCAGGTGTC
  Y
  ATGCAGGTGC CCATCCAGGT GTCCATGCAA GTGTCTGTGC AGGTGCCCAT CCAGGTATGC
  ATTCAGGTGT CCGTGCAGGT TAGCTGTGAG CCTACACAGC T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147659857	ENSMUSSNP6883830	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108900888					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138611241 () rs orientation: forward

Symbol	Name	Function Class
Pla2g2e	phospholipase A2, group IIE	1116 bp downstream
Rr603039	regulatory region 603039	238 bp proximal
Rr603040	regulatory region 603040	552 bp proximal