rs108897469 SNP Detail

Summary

• ID
  rs108897469
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152492857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGGCATA TCCCTGGAAT
  CCAGCACTGA GATAGGGAGA TGGAGAATTT GGGGCCAGCC TTGGCTACAC AGGAAATTGC
  ATCGCATTTA AGCTATATAG TGAGACCCTG TCTCAAACAT GGTACCACAT ACCTATAACC
  TCAGGACCCA AGAGGCAAGA GGATGCTGCG TTCAAAGACC GGCTTAGCTG TACAGTAAGA
  C
  TCTGTCTCAA AACACAAGAT CGAAGTAGCG GTCGTTGAGC CCTGAGATGC TCACAACACA
  GGCACTTCAT CAACTCCCAC AGTAGTGAAA GATGTGCATT TTACAGATGA GAGTGAAGAC
  TCCAACCTCA TGCAAAGTCA CAGGCAACAA ATAATATTAA AGACAAAAGA AGAAATGTCT
  GTTTCTTGTC AGGCATGATG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147970783	ENSMUSSNP2159813	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108897469					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152492857 () rs orientation: forward

Symbol	Name	Function Class
1700030C14Rik	RIKEN cDNA 1700030C14 gene	1946 bp downstream
D2Ertd691e	DNA segment, Chr 2, ERATO Doi 691, expressed	within coordinates
Gm31791	predicted gene, 31791	1796 bp downstream
Rr374088	regulatory region 374088	1160 bp upstream
Rr567410	regulatory region 567410	1915 bp proximal