rs108891274 SNP Detail

Summary

• ID
  rs108891274
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:20562288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATTCCTC AGTTGAGAAT
  TCTTTGTTTA GCTCCCTACC CCATTTTTAA TAGGGTTCTG GTTACTGAGT GCATACTATG
  TAGCAGGCTC AGTAGCAAGT GCGGAGGATA CAACATCAAG AGAGCCTTGC CCTCTTGGGA
  AGAACAGCCA TTTGGAAGGC CAGGGCTGCA AAAGCCTGCC TCTGAGATTG TAATCTCTGG
  R
  TGCCCTTTCC CAGCCTCTTG GCCTGGCACC TCAGAAGAGT GATTTCTCTT GTGGACTTAA
  GGGCCTTCAC TCAAGGAACA ACCCTATCAT GGGGTGGGGG GGGGGGGGGC GGGTGCGCTG
  TGTGTGCAGA GCTTACTGTA TGTGTGCAGA GACAAACAGC AGCAGAATGC CAAAAGGCTT
  CAGAGAGAGG CATAGAGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134672219	ENSMUSSNP6593858	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108891274					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20562288 () rs orientation: forward

Symbol	Name	Function Class
Gm31466	predicted gene, 31466	1918 bp upstream
Rr574081	regulatory region 574081	1135 bp proximal
Rr574082	regulatory region 574082	1264 bp proximal
Tssr32748	transcription start site region 32748	1914 bp upstream
Tssr32749	transcription start site region 32749	1899 bp upstream