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rs108885319 SNP Detail
Summary
  • ID
    rs108885319
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr6:89262648 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TAGCTTAGAC AATACAAGAA
    TAGACCAAAC TGGGCCAGGT TAGACCAAAC CAGACGATAC TAGAGTAGAC TAGCCCAGTA
    AAACTTAGAC CAGCCCAGAA GTTAGACCAG AATAGACAAG CCCAGGCCAG CTTAAATGAA
    TATAGGCTAG ACCTAGACCA AATTAGACCA GCCCAAACCA AATAAAACTA TATCAAGCCA
    R
    ACCAGATCCC AGCAGTCCAG TCCAGATTAG CTTTGACCAG AACATTCTAC TCAGTTCTTG
    GTCATGTGAT GTGGGCTGGG TCCCAAGGGC TGGCTGTATC CTACACACAG CTCACTCCAA
    AGGTCAGAAC AGGTGACTGG AGGTCACAAG TGGATACAAT CTGCAAGTTT GTCTGGGCCA
    CCACTGTTGA GCCATTGTTC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
DBA/2J
ss133371437 ENSMUSSNP1599901 ENSEMBL ENSEMBL_Sanger f SNP A G
SNP Consensus Information
SNP Consensus Type
A/J
DBA/2J
rs108885319 SNP A G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:89262648 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
4930512J16Rik RIKEN cDNA 4930512J16 gene within coordinates
Rr379731 regulatory region 379731 within coordinates
Rr379732 regulatory region 379732 1823 bp upstream
Rr634092 regulatory region 634092 within coordinates
Rr634093 regulatory region 634093 445 bp proximal
Rr634094 regulatory region 634094 671 bp proximal
Rr634095 regulatory region 634095 1157 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory