rs108885226 SNP Detail

Summary

• ID
  rs108885226
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:20019671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCCGCATC CTAGGGGAGG
  ACAGGGATGT TCTGAAACAC GGCTCCCTGA AGCACCTCAG GAGTCATCTC TCTGGGTCCA
  GTCTTCTGAG AGACTCCTGT AAATAAGCAC AGCTGCTCTG ATTGCAAAAG TGCAGTGGCC
  ATATCATAAC CAAAGGACAG AATTCCACAT TGCATCATTT CTTATCTGTT TTTCTGAACC
  R
  AATAATTCTA CTAATAGAAC ACCTGGCTAC CATGCTTTTT CCTTTTTACA GCACCATGGT
  ATACTAGAGT ATTAACATCA ACTTTCAAAA GGCCATAGTA GGCTTGTAAT TTTGTTAAAG
  AAAAAATTCT TACCTTTTAA TGACACATGC TCTGATATTT AGTAGTTAAA TATGTCTGAC
  ATCTGCTTTA AAATAATATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134671344	ENSMUSSNP4369679	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108885226					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20019671 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cp	ceruloplasmin			Intron
				Noncoding-Transcript-Variant
Rr574045	regulatory region 574045			437 bp distal
Rr574046	regulatory region 574046			within coordinates
Tssr28543	transcription start site region 28543			838 bp upstream
Tssr28544	transcription start site region 28544			856 bp upstream