rs108882796 SNP Detail

Summary

• ID
  rs108882796
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115994049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCTCCCT CCCTCCCTCC
  CTCCTTCCTT CCTTCCTTCC TCCCTCTCTC TCTCTTTTTT TTTTTTTTTG TTTTTGTTTT
  TTTGAGACAG GGTTTCTCTT TATAGCCCTG GCTGTCCTGA ACTCACTCTG TAGACCAGGC
  TGGCCTTGAA CTCAGAAATC TGCCTGCCTC TGCCTCCCAA ATGCTGAGAT TAAAGGCATG
  T
  GCCACCACGC CCGGCCTTCT GGCTGGTTTT TTAAGTCATT TATTTTTGAG ATAGGGTCTC
  ATTATGCAGA TCAGGTTGGC CTCAAACTCT GAGCTCCATC TGCTTCTGCC CCACACCCTC
  TAGTGCTGGG GTTAGAGTAT GCTACTACAT CTGGCCTGCT AAAGATTTTT AGTGGATGGT
  AATTAACCAG ATTTTGAAAT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss133574515	ENSMUSSNP3701565	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs108882796					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115994049 () rs orientation: forward

Symbol	Name	Function Class
Rr637138	regulatory region 637138	695 bp proximal
Rr637139	regulatory region 637139	973 bp proximal
Tmcc1	transmembrane and coiled coil domains 1	1523 bp downstream