rs108876629 SNP Detail

Summary

• ID
  rs108876629
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:64155540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGTATTC CTGACAGTAT
  GAAGACCCAC TTCTATTTCT AACCTTACAT TTTTTTCTTT TATTTTTCTG AAATTATGTG
  CCCAGAATGG GCTATCGCCT CATTTAGACC TGGGTTTAAG ACCTTCCCGT ACACATAAAG
  GTTTCTAGTG CACAGTTCCC CTGCTGCTGA ACAGGGCTAG TACGTCCCAA GTGCAGGCAG
  R
  ACAGAACCTA GCAGGCACAC ATGAAATGGC AACTAGTCTT AAGTCTCAGG ACTTACAGGA
  GGCTGCCTGC AGAGGAAGAA TACTACCGCT GCGCTATCCT GATTCACCTG TCACCTTGGT
  CAGTGTTGCT TCCTCTTTCC TTGGCAGCAG CTGAAGAAAA TGGGTCCAGA GCACTAAGTA
  GTCACAAAGC TCGCTAGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148017152	ENSMUSSNP3177578	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs108876629					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:64155540 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Asap1	ArfGAP with SH3 domain, ankyrin repeat and PH domain1			Intron
				Noncoding-Transcript-Variant
Rr503380	regulatory region 503380			1504 bp proximal
Tssr134529	transcription start site region 134529			1597 bp downstream