rs108874372 SNP Detail

Summary

• ID
  rs108874372
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:177480143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TAATGGCAGC ATGGATTCAG GTGAGGCTAA TGCTCAAAGA
  CCAGCCAGGC AAAAACAGGT TTTGCATTCC ACACATGCTC TCATCCATAA GTTTATTTCC
  T
  GTTCAGTCCC CAGGTTATTT TGAACAATTT CAATATGGAC TGGAGATTAC AAGTCCTACT
  TAAGACAGCT AGGAGATATA CAAAGCAAAG ACCCCCAGAA C                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148363158	ENSMUSSNP1670040	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108874372					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:177480143 () rs orientation: forward

Symbol	Name	Function Class
Gm14325	predicted gene 14325	Intron
Rr374347	regulatory region 374347	1186 bp downstream
Rr572329	regulatory region 572329	1555 bp proximal
Rr572330	regulatory region 572330	1958 bp proximal
Tssr28052	transcription start site region 28052	1994 bp downstream