rs108872212 SNP Detail

Summary

• ID
  rs108872212
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:139908898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCGCGAGCCT GAGTCCTAAT CGCCTAGGCT ATAGCGTCTC
  TCTCTTTAAG CGTTTGAGCT GAGACACTCC GCGGTTATTT CTGGCTTCTG ATATCTGAGG
  R
  TTTTTTAAAA TATGTATTTA TTGGCCTATT GGGGGTTTGT TTGTTGTCAT AGCTATACAA
  TCGCCGTTGC CCACCTTGCT TTCATTGTGC TCGGTAATT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147670592	ENSMUSSNP5248305	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108872212					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139908898 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12337	CpG island 12337	within coordinates
Rr397340	regulatory region 397340	11 bp downstream
Rr566073	regulatory region 566073	229 bp distal
Rr566074	regulatory region 566074	1122 bp distal
Rr566075	regulatory region 566075	513 bp distal
Rr566076	regulatory region 566076	within coordinates
Tasp1	taspase, threonine aspartase 1	173 bp upstream
Tssr26542	transcription start site region 26542	1131 bp upstream
Tssr26543	transcription start site region 26543	182 bp upstream