rs108847445 SNP Detail

Summary

• ID
  rs108847445
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:142118956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GGTTTCCTTA TCTGTGAAAT GGAATAATAT GGTGCTGACT
  TATCTCACAA TGTTACCCCG AGGATGGGAC AGGCTACCCT GTAAAGCACC TATAGAGAGC
  A
  CTGCTGTAAG CCTGCAATCC ATGTAGCTGG TTACTTCTGC CCTTTTACAA AGGAGATGGA
  GGAGAAGGAG GAGGAGGGGG GAGGAAGAGG AGGAGAAGAA A                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss147754437	ENSMUSSNP3283676	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs108847445					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142118956 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42339	predicted gene, 42339			within coordinates
Kazn	kazrin, periplakin interacting protein			Intron
				Noncoding-Transcript-Variant
Rr604070	regulatory region 604070			476 bp distal
Rr604071	regulatory region 604071			1239 bp proximal
Rr604072	regulatory region 604072			1476 bp proximal
Rr604073	regulatory region 604073			1813 bp proximal