rs108845912 SNP Detail

Summary

• ID
  rs108845912
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121515445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAAAAGAGC TTGATGGGGG AAGTTGACAG AGGGCACCAT
  TGAGATTATG TAAAGTACTT GATGAACTTG GTTGGTAAAG CTGTTAGCAT GCTCTATAAA
  Y
  GTGCACAAGA AGGGCTAAAA GCGTGCCCTG GTCACTTACA GACTCCTCAT CAGCCACATT
  GCACCACTGG TGATGCAAAA GGAAACTGGG CTCTCTACG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135727485	ENSMUSSNP1052200	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320905151	CHEV_3_121424714	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108845912					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121515445 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13760	CpG island 13760	1170 bp proximal
F3	coagulation factor III, tissue factor	1741 bp upstream
Gm43823	predicted gene 43823	within coordinates
Gm64338	predicted gene, 64338	within coordinates
Rr584147	regulatory region 584147	702 bp distal
Rr584148	regulatory region 584148	within coordinates
Rr584149	regulatory region 584149	854 bp proximal
Rr584150	regulatory region 584150	928 bp proximal
Rr584151	regulatory region 584151	1708 bp proximal
Rr584152	regulatory region 584152	1752 bp proximal
Rr584153	regulatory region 584153	1924 bp proximal
Rr584154	regulatory region 584154	1936 bp proximal
Tssr31453	transcription start site region 31453	1719 bp upstream
Tssr31454	transcription start site region 31454	1760 bp upstream
Tssr31455	transcription start site region 31455	1784 bp upstream
Tssr31456	transcription start site region 31456	1805 bp upstream
Tssr35426	transcription start site region 35426	1599 bp downstream