rs108820217 SNP Detail

Summary

• ID
  rs108820217
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103106495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGACTAA GGTTGGAGGA
  TCACAATTTT GAAGCTACCC TGGGGCAGCA TTTTATTCAT GTTATTAGCC TCAAAACAAA
  AAGTAAAAGA GGGTGTGTGT TTGGGAGGTG GGGTCTAGAC CACTGGTAGA GCACTGCCTA
  GCATGTGCAA GTCCATACAT TCAACCCCTA ACCCATGCAA AGAAAGAAAA CAAAGAAGAA
  R
  AAAGCGACAT CCATCATTGC TTATGAATTT TTAGAAAGGA TAGAATAATG AACTAGAAAT
  AATGATGGAA CCTGTACACT CAAGAAAACA CACACTCACA CACTCACAGA GAGAGACAGA
  GAGAGAGAGA GAAAGACACA CACACAGAGA AACAGACACA CACACACACA CACACAGAGA
  GAGAGAGAGA GAGAGAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147139517	ENSMUSSNP7237375	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321236287	CHEV_4_102921903	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108820217					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103106495 () rs orientation: forward

Symbol	Name	Function Class
4921539E11Rik	RIKEN cDNA 4921539E11 gene	Intron
Rr376942	regulatory region 376942	within coordinates
Rr596380	regulatory region 596380	559 bp proximal