rs108806403 SNP Detail

Summary

• ID
  rs108806403
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58490174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTATATAT TTCAAAACAA
  CGCTAAAACA AAATGTTCCT ATAGCTTAAC GAGATTTTGG AATCTCGTGG GTAAAAGGTT
  CCAGAAACAT AAAGTAAAAC AAAGTTCAGC AAATGGTTAA GGTGGAGAGA ACAAGTCCGA
  TAGAGTTCCT CTGTGCTTCT GCTGTGAGAT CCTTGGGACG GTGGTTCTTA ACATGTGATA
  S
  CCCTGTGGGA TCTGCAGACC CTTCCACAGG GGTCACAAGT CACAGCTTTA CATTTTGATG
  CACAGCACTA GCAAAATTAC AGGTATGAAG CCGCAACAAA AGAAACTTTA TGGTTGGGGG
  TCAGCACAAC ATGAAGAACT GTATTAAAGG GTCAGAGAAC TAGGAAGGTT GAGACTCGCT
  GCTTTAGGAC AAAACTCAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146392613	ENSMUSSNP3263566	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108806403					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58490174 () rs orientation: forward

Symbol	Name	Function Class
Lpar1	lysophosphatidic acid receptor 1	Intron
Rr592898	regulatory region 592898	282 bp proximal