rs108801797 SNP Detail

Summary

• ID
  rs108801797
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153663227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGCCTAG AACCCATGAT
  GGGCCTCCTA CTTGAGTTTC AGGTTCCAGG TGTGCACCAC TGTGCCAGGT TCACGTTCTT
  TCAAAAGTAG TTTTATTGAA TCTGCGTTAA TCAAAAATTT ATTATAAGAA ATGTGCTCCT
  CCAATTCTGG AAACCAAAAA GGCCTGCAAT TTGTTTCTGT CCAGCTTGAG ACCCAGAAGA
  R
  CCCAGGTGGA GCTCCAAGGG CTGATGTTCC AGATCAATGG ACTGGGAGAA TTCTGCTCAC
  ACTCATGGTT GAATGAGACC CCTACCACTG TATTAGGGAG GGCAGTCACC GTCATCCATG
  GTACCGATGT ACACATTCAT CTCACCCAGA AACACTCTCT TCAACCAGGC ATGGTGGCAC
  GTACCTGTAG TCCCAGCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss136115412	ENSMUSSNP5691500	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs108801797					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153663227 () rs orientation: forward

Symbol	Name	Function Class
Rr398135	regulatory region 398135	398 bp upstream
Rr587804	regulatory region 587804	1818 bp proximal
Rr587805	regulatory region 587805	1995 bp proximal
Tssr32440	transcription start site region 32440	807 bp upstream