rs108793318 SNP Detail

Summary

• ID
  rs108793318
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115994229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTGAGAT TAAAGGCATG
  TGCCACCACG CCCGGCCTTC TGGCTGGTTT TTTAAGTCAT TTATTTTTGA GATAGGGTCT
  CATTATGCAG ATCAGGTTGG CCTCAAACTC TGAGCTCCAT CTGCTTCTGC CCCACACCCT
  CTAGTGCTGG GGTTAGAGTA TGCTACTACA TCTGGCCTGC TAAAGATTTT TAGTGGATGG
  T
  AATTAACCAG ATTTTGAAAT TGTTAGCCCC TTTGCCCTAT GCAATCCTAG AGTGTGATGT
  GCACAGGCTC TCAGGGTGCA TTCTACGATT CTACTAGGCT AGCTCATAGT AAGCTAAAGG
  TATGCCCACA GCATCTTTAA AGCTGTCATG AAAGGTATCC CTTCCTGTCA CAACCCCTGG
  GTTGAGGCTG GGTGTGATGC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss133574530	ENSMUSSNP5781136	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs108793318					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115994229 () rs orientation: forward

Symbol	Name	Function Class
Rr637138	regulatory region 637138	515 bp proximal
Rr637139	regulatory region 637139	793 bp proximal
Tmcc1	transmembrane and coiled coil domains 1	1343 bp downstream