rs108792687 SNP Detail

Summary

• ID
  rs108792687
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:24716852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTGTCAAA CCTTTCTGAT AAACTCCCCC CCCCCCCAAA
  GACAGGGTTT CTCTGTGTAG CCCTGACTGT CCTGAAACTC ACTCTGTAGA ACAGGCTGGC
  C
  TCGAACTCAG AAATCCATTT GCCTCTGCCT CCCAAGTGCT GGGATTAAAG GAAGCATAGC
  CAACTTCCAT TAACATCTTT TTTTTTTTTT AAGATTTAT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss148095180	ENSMUSSNP1047729	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs108792687					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24716852 () rs orientation: forward

Symbol	Name	Function Class
Gbx1	gastrulation brain homeobox 1	Intron
Rr608341	regulatory region 608341	924 bp distal
Rr608342	regulatory region 608342	1016 bp distal
Rr608343	regulatory region 608343	836 bp distal
Rr608344	regulatory region 608344	328 bp proximal