rs108789892 SNP Detail

Summary

• ID
  rs108789892
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106715962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACTGCCA CGTGTGCCAG
  CCCTCAGCTG CCCCGAGAGC TGTCACTGTG GAAACAAGGA GAGTGTAGTA GATTGCTGTC
  TGTACTCCCC GCATTCAAGA AGGCAAGGCA GAGCTGGGTG TGGTGGCGCA CTCCTTTAAT
  CCCAGCACTT GGGAGGCAGA GGCAGGCGGA TTTCTGAGTT CGAGGCCAGC CTGGTCTACA
  G
  AGTGAGTTCC AGGACAGCCA GGGCTATACA GAGAAACCCT GTCTCAAAAA ACCAAAAAAA
  AAAAAAAAGA AGAAGAAGAA GGTGAGGCAG GAGGTGAGGA CATCCTTGAG ACTTTGCCTA
  AATAAATAAA AATATTTGGG CTGAAGAGAT GGCTCAGTGC TTATGAGCAC TGACAGTAGA
  GGGCCCAGGT TCGGTTCCCA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147172868	ENSMUSSNP7127609	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108789892					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106715962 () rs orientation: forward

Symbol	Name	Function Class
Gm12746	predicted gene 12746	247 bp upstream
Gm69780	predicted gene, 69780	506 bp downstream
Gm70282	predicted gene, 70282	1076 bp upstream
Rr376973	regulatory region 376973	233 bp upstream
Rr596849	regulatory region 596849	837 bp proximal
Rr596850	regulatory region 596850	1087 bp proximal
Tssr38192	transcription start site region 38192	956 bp upstream
Tssr42651	transcription start site region 42651	612 bp downstream
Tssr42652	transcription start site region 42652	822 bp downstream
Tssr42653	transcription start site region 42653	833 bp downstream