rs108774622 SNP Detail

Summary

• ID
  rs108774622
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:139908564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTCCGCAG CCAAGGGAAC TGGCGGCCCC CACGCGTGAC
  CACAACTCCG GGCCGGGGAA TCCGTGGGGC CCTGCGCCGG GCCGGACAGG TGGCGCCGTG
  M
  GAGCCGTCCC GAGCGGTGGC GTGAGGACGC CACGCGGGCC TGCCGGACCA TACGGAGACC
  GAGGCTAGGC AGCGGCGACG CGGACAGCGT CAGAACGAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147670562	ENSMUSSNP1528324	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108774622					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139908564 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12337	CpG island 12337			within coordinates
Rr397340	regulatory region 397340			22 bp upstream
Rr566073	regulatory region 566073			within coordinates
Rr566074	regulatory region 566074			788 bp distal
Rr566075	regulatory region 566075			179 bp distal
Rr566076	regulatory region 566076			106 bp proximal
Tasp1	taspase, threonine aspartase 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr26542	transcription start site region 26542			797 bp upstream
Tssr26543	transcription start site region 26543			17 bp downstream