rs108747540 SNP Detail

Summary

• ID
  rs108747540
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143656651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAGGAGG AGGAGGAGGA
  GGAGGAGGAG GAGGAGGAGG AGGAGGAGGA GAAGGAGAAG GAGAAGGAGA AGGAGAAGGA
  GAAGGAGAAG GAGAAGGAGA AGGAGAAGGA GAAGGAGAAG GAGAAGGAGA AGGAGAAGGA
  GAAGGAGACA GATATTATTA ACCACTGTGG AATACACTAA GAAACAGAGG ACTTATGAGA
  M
  TTCAATAAGC AAACTATTAT CTAGTATTCC CTAAAGGTCT TCTCTATGTA GCCCATAACC
  TCCCTCACAT CTCTTATTTA CCTAGTTTGA AGTAAGCCCT GTTATAATAC AAGCTCATAT
  CCCATGAATT CAGCATGGGC ATAAGACTCA TCTCAAGCAG AACACATTTC ATAAAAACAT
  CCTTTGGAAA TTCTTTTCAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136027381	ENSMUSSNP2348617	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108747540					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143656651 () rs orientation: forward

Symbol	Name	Function Class
Rr586569	regulatory region 586569	811 bp distal