rs108747396 SNP Detail

Summary

• ID
  rs108747396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:22033197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTGCTAG GAGCCATCTA
  GGAGATGCCA AAAAGTAGCA GGTGATTTTC CTCAGATGGT TCATCCTTGG ATTAAAATCT
  ACAGCAGACT TACTCCAGCA GGCAAGTTCC AGCAGGATTT CATTTTAGGA AAGATTCCTT
  CTATTAATAT GCTTTTCTTC TTATTATTAA CTATATATAA CAATCACTAA TCATTAGCTC
  Y
  TTTGAGCAGA TCTCTGTGGA TCAATGAAGA TGTACAGTCT TGTAGTGATG CTATATAGAC
  AAATAGGCGA ATTCTTAATT CTTAACAATG ATTCATTAAG AGTTCCTAAA ATTATATTAG
  GAATTATTAA GACTTTTATA ATAGGACTGC TATTAAATGT TTACTGATAT CAAAACTGCA
  ATGAGAATTC TGACAGTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146960025	ENSMUSSNP7243407	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108747396					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22033197 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1373	CpG island 1373	1101 bp proximal
Cpgi1374	CpG island 1374	1889 bp proximal
Raet1a	retinoic acid early transcript 1, alpha	1311 bp upstream
Raet1e	retinoic acid early transcript 1E	1244 bp upstream
Rr428833	regulatory region 428833	781 bp proximal
Rr428834	regulatory region 428834	1299 bp proximal
Tssr92677	transcription start site region 92677	1097 bp upstream
Tssr92678	transcription start site region 92678	1171 bp upstream
Tssr92679	transcription start site region 92679	1223 bp upstream
Tssr92680	transcription start site region 92680	1268 bp upstream