rs108747244 SNP Detail

Summary

• ID
  rs108747244
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101469874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTGAATT TCCCCCAAAG
  TATGTGCCTG CATTTGCAAT GGGGAGTCTT AAAAATAAAA GTAGAATATC CTAGACCAGG
  GTCAAGTGTG CAGTCTCCAC ACTGAGGGAA ACAAATAGCC ATAGGCGATA GTCTACATAA
  TGAAATCCTG TGGCCAGGTG CTCCAGAGGT TTATCAGAAT GTGATCTGAT TAGGAGAGTC
  R
  GGGGAAGGAT GTGCTATAAA TCAAGCCCAG AGTCAAATGC TTCTGAGATT GTCCTACCAT
  CCTAGCAAGG GGAATTTAAT ATCGGGCAGT ATTTACAGTG CTGCCAACTG ACTAACCGAG
  TGGATGGGAA GGCATCTACC AAAAGCGCCA GCATGCTCCA GGGAGTAGGA GGGTGGCAGG
  AACTTAGCTG TTTATTAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss147079128	ENSMUSSNP2392476	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A		G
ss320429671	CHEV_2_101479686	CHEVERUD	SCREENING_POP	f	SNP				G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs108747244					SNP	A	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101469874 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	82 bp proximal
Tssr25364	transcription start site region 25364	573 bp downstream
Tssr25365	transcription start site region 25365	697 bp downstream
Tssr25366	transcription start site region 25366	1738 bp downstream