rs108738758 SNP Detail

Summary

• ID
  rs108738758
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:20019678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CACAGCTGCT CTGATTGCAA AAGTGCAGTG GCCATATCAT
  AACCAAAGGA CAGAATTCCA CATTGCATCA TTTCTTATCT GTTTTTCTGA ACCGAATAAT
  Y
  CTACTAATAG AACACCTGGC TACCATGCTT TTTCCTTTTT ACAGCACCAT GGTATACTAG
  AGTATTAACA TCAACTTTCA AAAGGCCATA GTAGGCTTGT A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134671347	ENSMUSSNP5324642	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108738758					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20019678 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cp	ceruloplasmin			Intron
				Noncoding-Transcript-Variant
Rr574045	regulatory region 574045			444 bp distal
Rr574046	regulatory region 574046			within coordinates
Tssr28543	transcription start site region 28543			831 bp upstream
Tssr28544	transcription start site region 28544			849 bp upstream