rs108738175 SNP Detail

Summary

• ID
  rs108738175
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:99568310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTT TCAACATCAC TGGTTTTCTT
  Y
  TCTGGACCAA AGTCTTCCTT TATGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145068591	ENSMUSSNP1956574	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108738175					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:99568310 () rs orientation: forward

Symbol	Name	Function Class
Map1b	microtubule-associated protein 1B	Coding-Synonymous
Tssr123696	transcription start site region 123696	1901 bp upstream
Tssr123697	transcription start site region 123697	1710 bp upstream
Tssr123698	transcription start site region 123698	1560 bp upstream
Tssr123699	transcription start site region 123699	1476 bp upstream
Tssr123700	transcription start site region 123700	1429 bp upstream
Tssr123701	transcription start site region 123701	1404 bp upstream
Tssr123702	transcription start site region 123702	1385 bp upstream
Tssr123703	transcription start site region 123703	1333 bp upstream
Tssr123704	transcription start site region 123704	1277 bp upstream
Tssr123705	transcription start site region 123705	976 bp upstream
Tssr123706	transcription start site region 123706	749 bp upstream
Tssr123707	transcription start site region 123707	557 bp upstream
Tssr123708	transcription start site region 123708	359 bp upstream
Tssr123709	transcription start site region 123709	187 bp upstream
Tssr123710	transcription start site region 123710	1006 bp downstream
Tssr123711	transcription start site region 123711	1212 bp downstream
Tssr123712	transcription start site region 123712	1442 bp downstream
Tssr123713	transcription start site region 123713	1657 bp downstream
Tssr123714	transcription start site region 123714	1697 bp downstream
Tssr123715	transcription start site region 123715	1730 bp downstream
Tssr123716	transcription start site region 123716	1794 bp downstream