rs108736926 SNP Detail

Summary

• ID
  rs108736926
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27258623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTGCCCC AGGCTCTGCC
  AGCCTAGGCT GGGGAGTGAG CAGCCACCTG CAGCAGAATC CTCTCCAGCT GGAGAGGAGG
  AGGAATTGAG GATGGGGAGT GGGGTGGGGG GACAGGACAA CAGGACAGGA CACATCAGGC
  TGGAAGCCAC TCCCGCTGTA ACAACTCACA TGACCTCAGA CTAGCCTTCC ACACCCCCAC
  M
  CCCCCACCCC CGTTGTAGGA GGCGTGAAAT GGGAAAACCA CAGACTCCTC ATGTAGGCTG
  GTGAAAAGCC AAAAAAAAAA AAAATCCAAA ACAAAACAAA ACAAAAAAAA AAACCATCCT
  GCACGCTCAC AGAGCACCCT TAAAAGAAGA GAGCTTGCCT CCTATGCACA TGGCCCTGGG
  TTGGGGGCCC CAAGCCCAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325345387	CHEV_17_27176594	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108736926					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27258623 () rs orientation: forward

Symbol	Name	Function Class
Gm65707	predicted gene, 65707	111 bp upstream
Rr392460	regulatory region 392460	within coordinates
Rr524037	regulatory region 524037	122 bp distal
Rr524038	regulatory region 524038	21 bp distal
Rr524039	regulatory region 524039	233 bp proximal
Tssr143302	transcription start site region 143302	1822 bp downstream
Tssr143303	transcription start site region 143303	1513 bp downstream
Tssr143304	transcription start site region 143304	1017 bp downstream
Tssr146997	transcription start site region 146997	1203 bp upstream
Tssr146998	transcription start site region 146998	97 bp upstream