rs108729875 SNP Detail

Summary

• ID
  rs108729875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30659041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTATCTGCC CAGTTCTAGT
  GTTTTAAGGC TTATGATAAA TCTAAAGAGT TTTGTGTCTT TTATTTGGGA ACTATATGGT
  CCAAAGTGGG GGTAAACCCC CCAAAGTAAT ATTTATCACA ACAGTGTGGC TTTGTTTTGA
  TGTTCCTGGA CAATTTTATC AGAATTCAAA AGAACCATCG TAGCCAGGTT TAGTGGCACA
  Y
  ATCTTTAATC TCAGTACCAG GAAGCAGAGG CAGGTGGATC TATGTGAGCT TCAGGACAGC
  CTCATCTACA TAGTGAATTC CCTGTTTCAG AAAATCAAAG AAAGAAAGAC AGCCTGCCAA
  CCTCAGCAGC TCCTAAGACA AGGCCAACGA AGGAGAGAGA AATCTCGTGC CTTCGGAGCC
  TGCATGGAGG TCAGCCACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss146399220	ENSMUSSNP4350270	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs108729875					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30659041 () rs orientation: forward

Symbol	Name	Function Class
Rr554427	regulatory region 554427	299 bp proximal
Rr554428	regulatory region 554428	361 bp proximal
Rr554429	regulatory region 554429	1921 bp proximal