rs108725149 SNP Detail

Summary

• ID
  rs108725149
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27157755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAAACCA TGTTTTTGCC
  TCCTGGAGCT TATCTGTATG ATTGTACAAT TTACTCACAG GACCTTTTTT TTTTTTAAGA
  TTTATTTACT ATACATAAGT ACACTGTAGC TGACTTCCGT CGCACCAGAA GAGGGCATTA
  GATCTCATTA CAGATGGTTG GTTGTGAGCC ACCATGTTGC TGGAAATTGA ACTCAGGACC
  W
  ACGGAAGAGC AGTCAGTGCT CTTACCCGCT GAGCCATCTC GCCAGCCCCC ACAGGACTGT
  TCTTAACCTT CAGTTATTAT AAATTGTCTG ATGCTCTGAA TAAAGCTATT GTATGAGACT
  CCTCATTTAT TGGCTCCATT TTCCCAGATC TCACAACATC TAAAGTACCA GACAGCCCTT
  CTCCAAATAA TTACAAATAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss134702062	ENSMUSSNP3134918	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108725149					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27157755 () rs orientation: forward

Symbol	Name	Function Class
Ect2	ect2 oncogene	Intron
Rr574344	regulatory region 574344	250 bp distal