rs108721770 SNP Detail

Summary

• ID
  rs108721770
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48821639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTATGTCT TAGGCTACAC
  AGTACATTTG AAGTTGGTCT GGGTTATGTG GGCGTGGTGG CGCACACCTT TAATCCCAGC
  ACTCAGGAGG CAGAGGCAGG TGGATTTCTG AGTTCGAGGC CAGTCTGGTC TACATAGTGA
  GTTCCAGGAC AGCCAGGGTG ATACAGAGAA ACCCTGTCTC AAAAAAACCA AAAAAAAAAA
  W
  AAAAAAAAAA GAGACCCTGT TTCAAGATGA AAAACAAACT CCCAAGTTGT CTATGCTCTG
  TTATATTCAA ACCATTGTAA TTTGAGAACA GGGGGAAAGA TTTCCTCTCT CCCTGAGAAA
  TACCCCAGAA AGGTAAGATA AAGGTTTTGC CTTGTGTATG TGTTTGTATT CAATAAATAT
  TATTGAGCAT CTGTCACCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146280788	ENSMUSSNP2477133	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108721770					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48821639 () rs orientation: forward

Symbol	Name	Function Class
Gm52718	predicted gene, 52718	within coordinates
Rr376450	regulatory region 376450	18 bp upstream