rs108716316 SNP Detail

Summary

• ID
  rs108716316
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129940461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTAAAAATA GAAAGTTCTA GGTTTGCTTC TGTCCCAGAC
  CAGCTCAAGG CCAGCCTGAG CAACAGAGCG GTTTGGGTTT TTCGTTTGGT TGTTTTTTTT
  T
  TTTGTTTATT TGTTTGTTTT TGAGACAGGG TTTCTCTGTG TAGCCCTGGC TGTCCTGGAA
  CTCACTTTGT AGAGTAGGCT GTCCTCAACT CACAGAGAT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147458161	ENSMUSSNP6284777	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108716316					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129940461 () rs orientation: forward

Symbol	Name	Function Class
Col16a1	collagen, type XVI, alpha 1	1177 bp upstream
Gm12963	predicted gene 12963	within coordinates
Rr600419	regulatory region 600419	553 bp distal
Rr600420	regulatory region 600420	1007 bp distal
Rr600421	regulatory region 600421	325 bp proximal
Rr600422	regulatory region 600422	1081 bp proximal
Rr600423	regulatory region 600423	1183 bp proximal
Tssr1308	transcription start site region 1308	878 bp upstream
Tssr39217	transcription start site region 39217	692 bp upstream
Tssr39218	transcription start site region 39218	1188 bp upstream
Tssr39219	transcription start site region 39219	1246 bp upstream