rs108705522 SNP Detail

Summary

• ID
  rs108705522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:22034356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAACCCT GCAGCCCTCC
  GAAGCCACGT CCCACTGGAT CCCTTTCACG CCACTTATTT TCAGTCGTGA GATTCCCCCA
  CTAGAATGGT TGCAGTGAGA ACCAGAAATT TTCATTAAAC TCTCCCCCGC CCTCCCGGCC
  CCCAGTTCTG AGCCGATCAC TGGGGAGCAC AGCCAGGGCC TGGCCCGGCC TCGCTTGCTT
  Y
  CGAAGGCTGT AATTTGCACA CTCGCCTCCG GGTGGTTCTC CAGCCAGGAG GCTCGCAGGT
  CCACGCCCCT TGGCACCGGA GCCTCCTCCC TGGCTTCCCC GCGGGCGGCG CCTTCCGCCC
  TCCGCCATTG TGTCCATCCC CTGCCCGCAG AGCGCCGCTT GCCCGGGCCG CTGTAGTCAG
  TTACCTGCTC CGCCGGGCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146960160	ENSMUSSNP3224159	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs108705522					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22034356 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1373	CpG island 1373	within coordinates
Cpgi1374	CpG island 1374	730 bp proximal
Raet1a	retinoic acid early transcript 1, alpha	152 bp upstream
Raet1e	retinoic acid early transcript 1E	85 bp upstream
Rr384270	regulatory region 384270	876 bp upstream
Rr428833	regulatory region 428833	within coordinates
Rr428834	regulatory region 428834	140 bp proximal
Tssr92677	transcription start site region 92677	52 bp downstream
Tssr92678	transcription start site region 92678	12 bp upstream
Tssr92679	transcription start site region 92679	64 bp upstream
Tssr92680	transcription start site region 92680	109 bp upstream