rs108699274 SNP Detail

Summary

• ID
  rs108699274
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129474602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAAGGCCAA TGGCCTTTTG TGACTAGATG ACATTTCTCA
  GTGGAAAACA CTTTTTTTTT TTTTTTCCTT GAGACAGGGT TTCTCTGTAT AGCCCTGGCT
  R
  TCCTGGAACT CACACTGTAG ACCAGGCTGG CCTCAAACTC AGAAATCCAC CTGCCTCTGC
  CTCCCAAGTG CTGGGTTTAA AGGTGTGCAC TGGCACCAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135887686	ENSMUSSNP1171779	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108699274					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129474602 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Egf	epidermal growth factor			Intron
				Noncoding-Transcript-Variant
Rr585059	regulatory region 585059			706 bp distal
Rr585060	regulatory region 585060			172 bp distal
Rr585061	regulatory region 585061			491 bp proximal
Rr585062	regulatory region 585062			883 bp proximal
Rr585063	regulatory region 585063			1494 bp proximal