rs108685053 SNP Detail

Summary

• ID
  rs108685053
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115994046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTCCCTC CCTCCCTCCC
  TCCCTCCTTC CTTCCTTCCT TCCTCCCTCT CTCTCTCTTT TTTTTTTTTT TTGTTTTTGT
  TTTTTTGAGA CAGGGTTTCT CTTTATAGCC CTGGCTGTCC TGAACTCACT CTGTAGACCA
  GGCTGGCCTT GAACTCAGAA ATCTGCCTGC CTCTGCCTCC CAAATGCTGA GATTAAAGGC
  A
  TGTGCCACCA CGCCCGGCCT TCTGGCTGGT TTTTTAAGTC ATTTATTTTT GAGATAGGGT
  CTCATTATGC AGATCAGGTT GGCCTCAAAC TCTGAGCTCC ATCTGCTTCT GCCCCACACC
  CTCTAGTGCT GGGGTTAGAG TATGCTACTA CATCTGGCCT GCTAAAGATT TTTAGTGGAT
  GGTAATTAAC CAGATTTTGA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss133574512	ENSMUSSNP1162603	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs108685053					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115994046 () rs orientation: forward

Symbol	Name	Function Class
Rr637138	regulatory region 637138	698 bp proximal
Rr637139	regulatory region 637139	976 bp proximal
Tmcc1	transmembrane and coiled coil domains 1	1526 bp downstream