rs108681001 SNP Detail

Summary

• ID
  rs108681001
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153564713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATAACTC CTTTCTTGCA
  TTTTAGGTTC TAAAGCCAGA ACCACGTGGC TGAGGCTGCC AACTTCTGCT GCTTTGCGGA
  GCTGCAAGTT GGGCCCTCCT TTTTAGTGAC ATCCATTAAC GATAGTTTCT TTTACCACTT
  AAACTTTTCC TTGATCCCTT TCACACGTTG GGAATGAGGT TGTATGGGGC CTTGCCCTGA
  S
  GTCACCACAT TCTTTATCCC ATTTAGCATT AGGCTTTTCT TTAAACTGTT TTATTTCCCT
  GAGCACTGGA TTTAGCTGCA CTACACTTCC TGGAGCTTCT TTTCTCTTCA GACTATGCAT
  ATTCTAGTTC TCTTTATCTA GCTTGCTCCT TTTCATTATA GATCTGCATA AAATTGATTA
  CTGGTAACCA CACTACTCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148002157	ENSMUSSNP2288510	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss320564603	CHEV_2_153548529	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108681001					SNP	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153564713 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3c	DNA methyltransferase 3C	Intron
Rr567732	regulatory region 567732	359 bp proximal
Rr567733	regulatory region 567733	1596 bp proximal