rs108672882 SNP Detail

Summary

• ID
  rs108672882
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145409000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACAAATTC AAGTCAAATA
  GATCCCTTAT ACACAAAAAA TGGGCACCTA GCTATAAATA AACCATTGGA AACCTTTAAA
  TACAGTAATA GCTTTATGAG GTAGCTAGAA ATATGACTTC CCTATTCCAC AAATAACATT
  TGTGAATACC GTAGAATTCC AGCACAGAAT ATAACGGTAT TTAACAGCTC ACTCACTCAT
  K
  TGCTGCAAAG GCCATTGTGG GGAAGGAAGA AAGAGAACTC ATCTCTGGTT GTTACTCTCT
  GTAACAATTG CAGGTTATTT AGAGCTTGTC CTCTCCTCAG CCTGGGAGGA TGAGAGTTGA
  TTTGTTGGAT GTACGTGCAA TCTAGAAAGA AACCCTGGGC CTGCTTCCCA TGCTTGCGAG
  GGGACAGTCT CATCCCTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136039622	ENSMUSSNP4042959	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108672882					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145409000 () rs orientation: forward

Symbol	Name	Function Class
Rr586822	regulatory region 586822	946 bp distal
Rr586823	regulatory region 586823	17 bp proximal