rs108661772 SNP Detail

Summary

• ID
  rs108661772
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:22032885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTAAAATC ATATGTGAGG
  AGAGACCCTT GGTTTTAAAA TGCTTCCATA AGATAAGAAT GGAAACAAGC CTATAGGGCA
  TTTTCTCTAC TACTGTTCAA TGTGGAGGGC CCAGCCCCTT ATGGTGGTCC TTTTCTATAA
  GACAGCAGGC TAAGCAAGTC ATGAGGAGAA ATCTAGTAAG CAGCGCCCAC CCATGGTCTT
  Y
  GCATCAGTTT CTGCCTCCAG ATGCTTGCCC TCTTTGAGTC TTGTCCAGAC TTCTTTCAAA
  GGACAAGCAG TGATTTAGAA GTGTAAGCCA AATAAACATT TCCTCCCCAA GTCCCTGCTA
  GGAGCCATCT AGGAGATGCC AAAAAGTAGC AGGTGATTTT CCTCAGATGG TTCATCCTTG
  GATTAAAATC TACAGCAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146959975	ENSMUSSNP5393865	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs108661772					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22032885 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1373	CpG island 1373	1413 bp proximal
Raet1a	retinoic acid early transcript 1, alpha	1623 bp upstream
Raet1e	retinoic acid early transcript 1E	1556 bp upstream
Rr428833	regulatory region 428833	1093 bp proximal
Rr428834	regulatory region 428834	1611 bp proximal
Tssr92677	transcription start site region 92677	1409 bp upstream
Tssr92678	transcription start site region 92678	1483 bp upstream
Tssr92679	transcription start site region 92679	1535 bp upstream
Tssr92680	transcription start site region 92680	1580 bp upstream