rs108661096 SNP Detail

Summary

• ID
  rs108661096
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106716013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GGAGGCAGAG GCAGGCGGAT TTCTGAGTTC GAGGCCAGCC
  TGGTCTACAG AGTGAGTTCC AGGACAGCCA GGGCTATACA GAGAAACCCT GTCTCAAAAA
  A
  CCAAAAAAAA AAAAAAAGAA GAAGAAGAAG GTGAGGCAGG AGGTGAGGAC ATCCTTGAGA
  CTTTGCCTAA ATAAATAAAA ATATTTGGGC TGAAGAGATG G                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147172876	ENSMUSSNP3111857	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs108661096					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106716013 () rs orientation: forward

Symbol	Name	Function Class
Gm12746	predicted gene 12746	298 bp upstream
Gm69780	predicted gene, 69780	455 bp downstream
Gm70282	predicted gene, 70282	1025 bp upstream
Rr376973	regulatory region 376973	182 bp upstream
Rr596849	regulatory region 596849	786 bp proximal
Rr596850	regulatory region 596850	1036 bp proximal
Tssr38192	transcription start site region 38192	905 bp upstream
Tssr42651	transcription start site region 42651	561 bp downstream
Tssr42652	transcription start site region 42652	771 bp downstream
Tssr42653	transcription start site region 42653	782 bp downstream