rs108660373 SNP Detail

Summary

• ID
  rs108660373
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88722495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTTAGAGC CGTTCTCTCT CCTATCACGG GGTTCTGGGT
  AGCTTCTTGT AAGTTGGGAA CTCCAGACTC TCAGTCTGGA GGGCGAAGGG GACCTAGGCT
  K
  TGTTTATAGA GAGGGCCTTA GGAAGGGACT GTTCAGGCCC TGGATGAGCC CCTGGATGAG
  TGAGCATGGT TCTCCTCCAA GTCCCGAAGC AGGATTCCA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146940208	ENSMUSSNP4034709	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108660373					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88722495 () rs orientation: forward

Symbol	Name	Function Class
Gm13287	predicted gene 13287	456 bp downstream
Gm13288	predicted gene 13288	1273 bp upstream
Rr595110	regulatory region 595110	1686 bp distal
Rr595111	regulatory region 595111	994 bp distal
Rr595112	regulatory region 595112	1173 bp distal
Rr595113	regulatory region 595113	1027 bp distal
Rr595114	regulatory region 595114	685 bp distal
Rr595115	regulatory region 595115	203 bp proximal
Rr595116	regulatory region 595116	975 bp proximal
Rr595117	regulatory region 595117	1225 bp proximal
Rr595118	regulatory region 595118	1721 bp proximal
Rr595119	regulatory region 595119	1884 bp proximal