rs108652522 SNP Detail

Summary

• ID
  rs108652522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139300244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGACC ATAAGGGTGG AAAGTGGGTC
  Y
  ACCCCAGTGT CTCAGCCCTC TCAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147674640	ENSMUSSNP5438743	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321382444	CHEV_4_139128848	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs108652522					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139300244 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15171	CpG island 15171	753 bp proximal
Iffo2	intermediate filament family orphan 2	Intron
Rr603244	regulatory region 603244	1297 bp proximal
Rr603245	regulatory region 603245	1598 bp proximal
Rr603246	regulatory region 603246	1691 bp proximal
Tssr39955	transcription start site region 39955	1711 bp upstream
Tssr39956	transcription start site region 39956	1764 bp upstream