rs108647533 SNP Detail

Summary

• ID
  rs108647533
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:64155582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTACATTT TTTTCTTTTA
  TTTTTCTGAA ATTATGTGCC CAGAATGGGC TATCGCCTCA TTTAGACCTG GGTTTAAGAC
  CTTCCCGTAC ACATAAAGGT TTCTAGTGCA CAGTTCCCCT GCTGCTGAAC AGGGCTAGTA
  CGTCCCAAGT GCAGGCAGAA CAGAACCTAG CAGGCACACA TGAAATGGCA ACTAGTCTTA
  M
  GTCTCAGGAC TTACAGGAGG CTGCCTGCAG AGGAAGAATA CTACCGCTGC GCTATCCTGA
  TTCACCTGTC ACCTTGGTCA GTGTTGCTTC CTCTTTCCTT GGCAGCAGCT GAAGAAAATG
  GGTCCAGAGC ACTAAGTAGT CACAAAGCTC GCTAGCTCTT ACAGCCTTCA TTTCAACGGC
  TGACTCAAAA TGCTCAATTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148017162	ENSMUSSNP3843114	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs108647533					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:64155582 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Asap1	ArfGAP with SH3 domain, ankyrin repeat and PH domain1			Intron
				Noncoding-Transcript-Variant
Rr503380	regulatory region 503380			1462 bp proximal
Tssr134529	transcription start site region 134529			1555 bp downstream