rs108646406 SNP Detail

Summary

• ID
  rs108646406
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114354423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAGTGAT TCATTTGTCT
  CCCTCTCGAA GTCACCTTCA TCCCAGGCTT CAGAGGGCAG GCACGGGCGC TTTGATGCAG
  AGGCATCATG TCAGGGAAAT GGAAACATTT CACATTGTAA ATCCTCAGGT TGTCAGAGAA
  ACCCTAATGA GAAAGGAGAC TGGCAAGGAG CACCCAGGGC TGCTTGAGGA GGGGGTGCTC
  R
  AGACTCTGAG AGACAGAAAT ATAGCCTGTC ACTCTGTTAA CACGCTTTCT TCACTGTACC
  CATGGGAGGC AGGTCATTCT CCCAGGGTCC CACTGGGCTG GAAGCCATGG CATTTAGCAG
  TTGGTTCAAA TGCTTTAGTC AGTTGAAGCC ACCCAGGGCT GAAAGTATTT TGGAACGTCT
  GAAATTGGAG TCTGATTACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss147269853	ENSMUSSNP2822822	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs108646406					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114354423 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597585	regulatory region 597585			860 bp distal
Rr597586	regulatory region 597586			620 bp proximal
Trabd2b	TraB domain containing 2B			Intron
				Noncoding-Transcript-Variant